PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g006430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 222aa    MW: 24837.4 Da    PI: 4.7388
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g006430.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12.1e-10112205280
                     EEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfv 80 
                     +k+lt sdv+++ rl +pk+ ++eh             + + + + ++t+ d++   + ++ ++ +++ g+yvl ++W k+Fv+ ++Lk+g+ +
  Csa01g006430.1 112 KKTLTMSDVGSQTRLLIPKEPTNEHilnylteeeiklvEDEDHLGLKITVFDSKEkTTHQLCFKRWNSAGSYVLNNNWnKDFVQRKELKAGEAI 205
                     6999*********************9987776666666333345556666665543222333333*************557**********976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.67E-14107211IPR015300DNA-binding pseudobarrel domain
CDDcd100175.01E-16109221No hitNo description
Gene3DG3DSA:2.40.330.109.0E-15111211IPR015300DNA-binding pseudobarrel domain
PfamPF037541.3E-8111191IPR005508B3 domain-containing protein
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MLLFPCNGEG LAYTVPCGIR SEGLVMNTQD DTPPSSPTSP RLLELFPCES VALLDLFPCQ  60
GGEFACVVPP SVTRNETGVS LAYFRNMPGE ESDMIIATEL TVSIEADIWK IKKTLTMSDV  120
GSQTRLLIPK EPTNEHILNY LTEEEIKLVE DEDHLGLKIT VFDSKEKTTH QLCFKRWNSA  180
GSYVLNNNWN KDFVQRKELK AGEAIGLFWN PYASRLHLRV L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010468027.11e-141PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLR0I8N33e-93R0I8N3_9BRAS; Uncharacterized protein
STRINGBra040538.1-P4e-50(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.16e-26B3 family protein